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Crystal Structure of Sure Protein from Aquifex aeolicus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J9L PDB ENTRY 1J9L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.5 2.5 M NACL, 0.1 M ACETATE PH 4.5, 0.2 M LI SULFATE, OIL (TERA), MICROBATCH UNDER OIL
Crystal Properties Matthews coefficient Solvent content 2.59 52.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.006 α = 90 b = 65.006 β = 90 c = 239.194 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2007-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 36.5 95.9 0.08 22 8.7 91484 19.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 68.2 0.19 3 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J9L 1.5 36.47 86861 4577 96.01 0.15746 0.15573 0.1603 0.19085 0.1973 RANDOM 15.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 0.07 0.14 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.398 r_dihedral_angle_4_deg 17.839 r_dihedral_angle_3_deg 11.978 r_sphericity_free 7.973 r_dihedral_angle_1_deg 6.119 r_sphericity_bonded 4.651 r_scangle_it 4.52 r_scbond_it 3.204 r_mcangle_it 2.416 r_mcbond_it 1.593
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.398 r_dihedral_angle_4_deg 17.839 r_dihedral_angle_3_deg 11.978 r_sphericity_free 7.973 r_dihedral_angle_1_deg 6.119 r_sphericity_bonded 4.651 r_scangle_it 4.52 r_scbond_it 3.204 r_mcangle_it 2.416 r_mcbond_it 1.593 r_angle_refined_deg 1.591 r_rigid_bond_restr 1.558 r_angle_other_deg 1.019 r_mcbond_other 0.821 r_nbd_refined 0.237 r_symmetry_vdw_refined 0.229 r_symmetry_vdw_other 0.227 r_symmetry_hbond_refined 0.213 r_nbd_other 0.194 r_xyhbond_nbd_refined 0.19 r_nbtor_refined 0.182 r_chiral_restr 0.108 r_nbtor_other 0.085 r_metal_ion_refined 0.053 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3932 Nucleic Acid Atoms Solvent Atoms 605 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing