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Structure of the Tie2 kinase domain in complex with a thiazolopyrimidine inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FVR PDB ENTRY 1FVR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 293 5 MG/ML PROTEIN, 5% (W/V) PEG6000, 5% (V/V) MPD, 100MM MOPS PH7.5, 293K
Crystal Properties Matthews coefficient Solvent content 3.36 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.164 α = 90 b = 108.791 β = 90 c = 101.573 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 32.97 98.3 0.12 12.2 5.3 9451 3.7 45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3.11 99.1 0.44 1.78 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FVR 2.95 32.97 8822 445 95.97 0.19873 0.19568 0.1927 0.25858 0.2498 RANDOM 35.362
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.75 -2.84 6.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.08 r_dihedral_angle_3_deg 21.82 r_dihedral_angle_4_deg 15.705 r_dihedral_angle_1_deg 6.401 r_scangle_it 2.96 r_scbond_it 1.726 r_angle_refined_deg 1.494 r_mcangle_it 1.456 r_angle_other_deg 0.926 r_mcbond_it 0.771
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.08 r_dihedral_angle_3_deg 21.82 r_dihedral_angle_4_deg 15.705 r_dihedral_angle_1_deg 6.401 r_scangle_it 2.96 r_scbond_it 1.726 r_angle_refined_deg 1.494 r_mcangle_it 1.456 r_angle_other_deg 0.926 r_mcbond_it 0.771 r_mcbond_other 0.096 r_chiral_restr 0.078 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2286 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing