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GCN4 leucine zipper mutant with three IxxNTxx motifs coordinating chloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WQ1 PDB ENTRY 2WQ1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 2.4 M (NH4)2HPO4, 100 MM TRIS PH 8.5
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.44 α = 90 b = 56.44 β = 90 c = 56.44 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.12 18 99.3 0.04 18.8 4.74 11605 14.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.12 1.19 99.1 0.66 2.2 4.63
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WQ1 1.12 17.85 11024 581 100 0.15069 0.14832 0.1562 0.19718 0.2141 RANDOM 13.593
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.447 r_dihedral_angle_3_deg 17.485 r_dihedral_angle_4_deg 10.16 r_scangle_it 8.236 r_sphericity_free 8.016 r_sphericity_bonded 6.543 r_scbond_it 5.924 r_mcangle_it 5.673 r_mcbond_other 5.019 r_mcbond_it 4.408
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.447 r_dihedral_angle_3_deg 17.485 r_dihedral_angle_4_deg 10.16 r_scangle_it 8.236 r_sphericity_free 8.016 r_sphericity_bonded 6.543 r_scbond_it 5.924 r_mcangle_it 5.673 r_mcbond_other 5.019 r_mcbond_it 4.408 r_dihedral_angle_1_deg 4.26 r_angle_other_deg 3.787 r_rigid_bond_restr 3.587 r_angle_refined_deg 1.624 r_symmetry_vdw_other 0.336 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.224 r_nbd_other 0.202 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.144 r_chiral_restr 0.108 r_nbtor_other 0.094 r_bond_refined_d 0.016 r_gen_planes_other 0.016 r_gen_planes_refined 0.009 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 254 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing