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GCN4 leucine zipper mutant with two VxxNxxx motifs coordinating chloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GCM PDB ENTRY 1GCM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 30% PEG 4000, 200 MM NA-ACETATE, 0.1 M TRIS, PH 8.5
Crystal Properties Matthews coefficient Solvent content 1.9 35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 25.38 α = 83.98 b = 25.44 β = 84.86 c = 33.7 γ = 78.55
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 40 91.1 0.04 10.8 2 20616 17.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.33 87.4 0.47 1.85 1.98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GCM 1.25 19.51 19310 1453 100 0.18126 0.17807 0.1862 0.22339 0.2285 RANDOM 14.911
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.04 0.37 -0.06 -0.3 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.243 r_dihedral_angle_3_deg 15.699 r_dihedral_angle_4_deg 14.903 r_scangle_it 9.061 r_scbond_it 6.184 r_sphericity_bonded 5.383 r_mcangle_it 5.175 r_mcbond_it 4.414 r_dihedral_angle_1_deg 4.215 r_rigid_bond_restr 2.776
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.243 r_dihedral_angle_3_deg 15.699 r_dihedral_angle_4_deg 14.903 r_scangle_it 9.061 r_scbond_it 6.184 r_sphericity_bonded 5.383 r_mcangle_it 5.175 r_mcbond_it 4.414 r_dihedral_angle_1_deg 4.215 r_rigid_bond_restr 2.776 r_sphericity_free 2.488 r_mcbond_other 1.828 r_angle_refined_deg 1.369 r_angle_other_deg 1.325 r_symmetry_vdw_other 0.288 r_nbd_refined 0.22 r_xyhbond_nbd_refined 0.194 r_symmetry_vdw_refined 0.192 r_nbd_other 0.185 r_nbtor_refined 0.178 r_symmetry_hbond_refined 0.153 r_chiral_restr 0.09 r_nbtor_other 0.077 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 814 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing