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Betaine aldehyde dehydrogenase from Pseudomonas aeruginosa with NAD(P) H-catalytic thiol adduct.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WME PDB ENTRY 2WME
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 CRYSTAL WERE GROWN IN 85 MM HEPES, PH 7.5, 8.5% (V:V) ISOPROPANOL, 17% PEG 4000 AND 2 MM NADPH
Crystal Properties Matthews coefficient Solvent content 3.79 67.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.749 α = 90 b = 151.749 β = 90 c = 242.053 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH HIGH-RESOLUTION DOUBLE- CRYSTAL SI(220) SAGITTAL FOCUSING, ROSENBAUM- ROCK VERTICAL FOCUSING MIRROR 2008-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 35 99.2 0.07 6.9 2.3 143189 35.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 99.9 0.38 1.9 2.2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2WME 2.3 63.414 1.35 141572 7099 98.87 0.1635 0.1593 0.1308 0.1983 0.1965 44.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.3935 -1.3935 2.7871
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.304 f_angle_d 1.418 f_chiral_restr 0.07 f_bond_d 0.033 f_plane_restr 0.029
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14976 Nucleic Acid Atoms Solvent Atoms 1088 Heterogen Atoms 375
Software Software Software Name Purpose PHENIX refinement MOSFLM data reduction SCALA data scaling PHASER phasing