☰ Navigation Tabs
Trypanosoma brucei trypanothione reductase with bound NADP.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WOI PDB ENTRY 2WOI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 15MG/ML PROTEIN IN 25MM HEPES PH 7.5 AND 50MM NABR EQUILIBRATED AGAINST 24% MPD, 10% PEG3350 AND 40MM IMIDAZOLE PH 8.0.
Crystal Properties Matthews coefficient Solvent content 2.52 51.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.87 α = 90 b = 63.45 β = 97.85 c = 169.35 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV MIRRORS 2009-01-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 19.9 93.3 0.11 14.8 3.6 72546 2 37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 85.6 0.4 3.6 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WOI 2.5 19.847 72538 3627 100 0.182 0.1788 0.1789 0.2508 0.2502 RANDOM 27.915
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.452 0.042 -0.112 1.575
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.94 r_dihedral_angle_3_deg 17.684 r_dihedral_angle_4_deg 17.004 r_dihedral_angle_1_deg 6.614 r_scangle_it 3.581 r_scbond_it 2.237 r_angle_refined_deg 1.73 r_mcangle_it 1.39 r_mcbond_it 0.738 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.94 r_dihedral_angle_3_deg 17.684 r_dihedral_angle_4_deg 17.004 r_dihedral_angle_1_deg 6.614 r_scangle_it 3.581 r_scbond_it 2.237 r_angle_refined_deg 1.73 r_mcangle_it 1.39 r_mcbond_it 0.738 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.279 r_symmetry_hbond_refined 0.255 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.142 r_metal_ion_refined 0.131 r_chiral_restr 0.109 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14831 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 411
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing