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CRYSTAL STRUCTURE OF APLYSIA ACHBP IN COMPLEX WITH DMXBA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BYN PDB ENTRY 2BYN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 13% PEG4000, 0.1 M HEPES PH 7.5, 15% ISOPROPANOL, 15% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.63 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.222 α = 90 b = 114.799 β = 90 c = 131.284 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2006-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47 99.9 0.06 16.8 4.3 122269 23.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.9 0.5 2.4 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BYN 1.8 20 116030 6066 99.85 0.17042 0.16855 0.1912 0.20605 0.2209 RANDOM 36.746
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 -0.76 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.778 r_dihedral_angle_4_deg 19.998 r_dihedral_angle_3_deg 14.492 r_dihedral_angle_1_deg 6.322 r_scangle_it 3.366 r_scbond_it 2.294 r_mcangle_it 1.593 r_angle_refined_deg 1.507 r_mcbond_it 1.051 r_angle_other_deg 0.903
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.778 r_dihedral_angle_4_deg 19.998 r_dihedral_angle_3_deg 14.492 r_dihedral_angle_1_deg 6.322 r_scangle_it 3.366 r_scbond_it 2.294 r_mcangle_it 1.593 r_angle_refined_deg 1.507 r_mcbond_it 1.051 r_angle_other_deg 0.903 r_symmetry_vdw_other 0.283 r_mcbond_other 0.258 r_symmetry_hbond_refined 0.239 r_nbd_other 0.22 r_nbd_refined 0.201 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.183 r_symmetry_vdw_refined 0.12 r_nbtor_other 0.099 r_chiral_restr 0.094 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8486 Nucleic Acid Atoms Solvent Atoms 992 Heterogen Atoms 179
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing