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Crystal Structure Analysis of Klebsiella sp ASR1 Phytase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 M SODIUM FORMATE
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.68 α = 90 b = 133.68 β = 90 c = 111.24 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2004-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 94.49 94.1 0.07 15 5.7 113622
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.75 72.9 0.41 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.68 94.49 107604 5643 99.25 0.18249 0.18115 0.1809 0.20744 0.2079 RANDOM 23.288
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.31 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.535 r_dihedral_angle_4_deg 20.938 r_dihedral_angle_3_deg 13.087 r_dihedral_angle_1_deg 5.603 r_scangle_it 4.398 r_scbond_it 2.69 r_mcangle_it 1.747 r_angle_refined_deg 1.315 r_mcbond_it 0.998 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.535 r_dihedral_angle_4_deg 20.938 r_dihedral_angle_3_deg 13.087 r_dihedral_angle_1_deg 5.603 r_scangle_it 4.398 r_scbond_it 2.69 r_mcangle_it 1.747 r_angle_refined_deg 1.315 r_mcbond_it 0.998 r_nbtor_refined 0.301 r_nbd_refined 0.194 r_symmetry_hbond_refined 0.18 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.124 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6174 Nucleic Acid Atoms Solvent Atoms 771 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALEPACK data scaling SOLVE phasing