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Structure of the N-terminal capsid domain of HIV-2
Crystallization Crystal Properties Matthews coefficient Solvent content 2.32 46.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.52 α = 90 b = 47.815 β = 90 c = 88.57 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 34 99.9 0.05 12.9 3.9 113327 2 17.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.25 88.57 107428 5669 99.79 0.15456 0.15295 0.1651 0.18444 0.1957 RANDOM 16.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 -0.59 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.629 r_dihedral_angle_4_deg 21.366 r_dihedral_angle_3_deg 14.713 r_sphericity_free 13.54 r_sphericity_bonded 6.781 r_scangle_it 6.587 r_dihedral_angle_1_deg 6.584 r_scbond_it 4.713 r_mcangle_it 3.674 r_mcbond_it 2.744
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.629 r_dihedral_angle_4_deg 21.366 r_dihedral_angle_3_deg 14.713 r_sphericity_free 13.54 r_sphericity_bonded 6.781 r_scangle_it 6.587 r_dihedral_angle_1_deg 6.584 r_scbond_it 4.713 r_mcangle_it 3.674 r_mcbond_it 2.744 r_rigid_bond_restr 2.668 r_angle_refined_deg 2.429 r_mcbond_other 1.655 r_angle_other_deg 1.318 r_chiral_restr 0.159 r_bond_refined_d 0.031 r_gen_planes_refined 0.014 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2278 Nucleic Acid Atoms Solvent Atoms 675 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement