X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WL3PDB ENTRY 2WL3

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
130% PEG 400. 0.1M HEPES PH7.5, 0.2M MAGNESIUM CHLORIDE
Crystal Properties
Matthews coefficientSolvent content
2.7455

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.562α = 90
b = 102.562β = 90
c = 142.132γ = 90
Symmetry
Space GroupP 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray2942005-08-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPSAPS

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.94099.20.0623.73.71144021.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9798.90.333.63.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WL31.9142.17108666573599.010.151840.150550.17602RANDOM18.827
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.34.3-8.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.473
r_dihedral_angle_4_deg20.969
r_dihedral_angle_3_deg14.419
r_dihedral_angle_1_deg5.635
r_scangle_it1.663
r_scbond_it1.076
r_angle_refined_deg1.07
r_angle_other_deg1.07
r_mcangle_it0.717
r_mcbond_it0.392
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.473
r_dihedral_angle_4_deg20.969
r_dihedral_angle_3_deg14.419
r_dihedral_angle_1_deg5.635
r_scangle_it1.663
r_scbond_it1.076
r_angle_refined_deg1.07
r_angle_other_deg1.07
r_mcangle_it0.717
r_mcbond_it0.392
r_chiral_restr0.071
r_bond_refined_d0.007
r_bond_other_d0.007
r_gen_planes_refined0.004
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9348
Nucleic Acid Atoms
Solvent Atoms302
Heterogen Atoms41

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing