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gamma lactamase from Delftia acidovorans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 15% PEG 4000 0.1 M SODIUM ACETATE PH 5.6, 50 MM NACL
Crystal Properties Matthews coefficient Solvent content 2.35 47.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.871 α = 105.71 b = 94.621 β = 90.27 c = 152.297 γ = 108.46
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-09-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 25 91.2 0.08 11.3 2 176148 35.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.19 72.1 0.5 2.1 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.08 24.78 172361 3457 90.8 0.221 0.22 0.2152 0.269 0.2639 RANDOM 37.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.69 0.64 -1.25 -0.77 -2.2 -3.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.565 r_dihedral_angle_4_deg 18.035 r_dihedral_angle_3_deg 14.039 r_dihedral_angle_1_deg 6.321 r_scangle_it 5.639 r_scbond_it 4.147 r_mcangle_it 2.953 r_mcbond_it 1.759 r_angle_refined_deg 1.319 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.565 r_dihedral_angle_4_deg 18.035 r_dihedral_angle_3_deg 14.039 r_dihedral_angle_1_deg 6.321 r_scangle_it 5.639 r_scbond_it 4.147 r_mcangle_it 2.953 r_mcbond_it 1.759 r_angle_refined_deg 1.319 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 24992 Nucleic Acid Atoms Solvent Atoms 1848 Heterogen Atoms 16
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MLPHARE phasing DM phasing REFMAC refinement