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Crystal structure of the acyl-enzyme OXA-10 K70C-Ampicillin at pH 7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K4F PDB ENTRY 1K4F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.7M AS, 0.1M HEPES PH 7
Crystal Properties Matthews coefficient Solvent content 2.49 50.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.92 α = 90 b = 97.09 β = 90 c = 126.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 48.56 82.1 0.16 10.7 7.9 47137 16.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.89 59 0.9 2.2 6.9
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1K4F 1.791 26.444 1.38 46137 2325 80.44 0.2032 0.2002 0.202 0.2592 9.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.1915 -4.4774 -1.3619
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.611 f_angle_d 1.446 f_chiral_restr 0.094 f_bond_d 0.013 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3868 Nucleic Acid Atoms Solvent Atoms 275 Heterogen Atoms 73
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling AMoRE phasing