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Structure of Plp_Thr_decanoyl-CoA aldimine form of Vibrio cholerae CqsA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.49 50.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.03 α = 90 b = 70.57 β = 90 c = 70.67 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 91 0.05 22 5.7 63292
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.01 83 0.47 3.5 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.91 19.81 60048 3197 90.7 0.203 0.2 0.253 0.2228 RANDOM 28.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.22 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.739 r_dihedral_angle_4_deg 17.793 r_dihedral_angle_3_deg 16.57 r_dihedral_angle_1_deg 7.856 r_scangle_it 2.738 r_scbond_it 1.632 r_angle_refined_deg 1.176 r_mcangle_it 0.993 r_mcbond_it 0.516 r_chiral_restr 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.739 r_dihedral_angle_4_deg 17.793 r_dihedral_angle_3_deg 16.57 r_dihedral_angle_1_deg 7.856 r_scangle_it 2.738 r_scbond_it 1.632 r_angle_refined_deg 1.176 r_mcangle_it 0.993 r_mcbond_it 0.516 r_chiral_restr 0.08 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6023 Nucleic Acid Atoms Solvent Atoms 822 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement