☰ Navigation Tabs
Bacteriorhodopsin mutant E194D
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C3W PDB ENTRY 1C3W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 5.6 LIPID CUBIC PHASE AFTER LUECKE ET AL., pH 5.6
Crystal Properties Matthews coefficient Solvent content 1.84 33.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.22 α = 90 b = 61.22 β = 90 c = 111.04 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 99.8 0.07 22.18 6.2965 12843 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.3 99.2 0.33 4.97 6.16502
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1C3W 2.15 40 12199 94.8 0.1826 0.168 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 1 1756
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.078 s_non_zero_chiral_vol 0.023 s_zero_chiral_vol 0.02 s_angle_d 0.015 s_from_restr_planes 0.0135 s_bond_d 0.007 s_anti_bump_dis_restr 0.004 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1719 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 20
Software Software Software Name Purpose SHELXL-97 refinement XDS data reduction XSCALE data scaling MOLREP phasing