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Crystal Structures of the N-terminal Intracellular Domain of FeoB from Klebsiella Pneumoniae in Apo Form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other STRUCTURE OF FEOB IN GMPPNP STATE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 100 MM TRIS-HCL PH 8.5, 30% PEG4000, 200 MM MGCL2
Crystal Properties Matthews coefficient Solvent content 2.09 41.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.204 α = 90 b = 84.204 β = 90 c = 122.457 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 25.13 99.7 0.1 18.9 4.6 18109 2 19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.54 100 0.28 6.1 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT STRUCTURE OF FEOB IN GMPPNP STATE 2.45 25.13 2 16910 817 93.3 0.209 0.209 0.2151 0.23 0.2403 RANDOM 30
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.77 -5.77 11.53
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.4 c_improper_angle_d 2.78 c_angle_deg 2.7 c_scangle_it 2.52 c_mcangle_it 1.92 c_scbond_it 1.77 c_mcbond_it 1.14 c_bond_d 0.031 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.4 c_improper_angle_d 2.78 c_angle_deg 2.7 c_scangle_it 2.52 c_mcangle_it 1.92 c_scbond_it 1.77 c_mcbond_it 1.14 c_bond_d 0.031 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3689 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 2
Software Software Software Name Purpose CNS refinement SCALEPACK data scaling MOLREP phasing