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Orally Active 2-Amino Thienopyrimidine Inhibitors of the Hsp90 Chaperone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UY6 PDB ENTRY 1UY6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.8 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.682 α = 90 b = 89.172 β = 90 c = 99.783 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV OSMIC BLUE MIRRORS 2002-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 92.8 0.02 21.2 2 21769 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.25 64 0.18 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UY6 1.9 65.94 20654 1114 92.73 0.19992 0.19772 0.1899 0.24248 0.2305 RANDOM 24.298
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 0.6 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.862 r_dihedral_angle_4_deg 20.503 r_dihedral_angle_3_deg 14.116 r_dihedral_angle_1_deg 6.187 r_scangle_it 5.689 r_scbond_it 3.962 r_mcangle_it 2.298 r_angle_refined_deg 2.215 r_mcbond_it 1.398 r_chiral_restr 0.167
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.862 r_dihedral_angle_4_deg 20.503 r_dihedral_angle_3_deg 14.116 r_dihedral_angle_1_deg 6.187 r_scangle_it 5.689 r_scbond_it 3.962 r_mcangle_it 2.298 r_angle_refined_deg 2.215 r_mcbond_it 1.398 r_chiral_restr 0.167 r_bond_refined_d 0.028 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1628 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction AMoRE phasing