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Cellvibrio japonicus Man26A E121A and E320G double mutant in complex with mannobiose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GW1 PDB ENTRY 1GW1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100MMTRIS PH7, 26% MEONOMETHYLETHER PEG550, 3MM ZNSO4, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.7 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.177 α = 90 b = 93.177 β = 90 c = 53.78 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 100 0.04 53 3.7 73813
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 100 0.27 5.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GW1 1.5 19.98 70068 3711 99.9 0.145 0.144 0.142 0.165 0.164 RANDOM 18.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.584 r_dihedral_angle_4_deg 13.042 r_dihedral_angle_3_deg 10.965 r_dihedral_angle_1_deg 5.594 r_sphericity_free 4.734 r_scangle_it 3.521 r_sphericity_bonded 3.102 r_scbond_it 2.395 r_mcangle_it 1.723 r_rigid_bond_restr 1.361
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.584 r_dihedral_angle_4_deg 13.042 r_dihedral_angle_3_deg 10.965 r_dihedral_angle_1_deg 5.594 r_sphericity_free 4.734 r_scangle_it 3.521 r_sphericity_bonded 3.102 r_scbond_it 2.395 r_mcangle_it 1.723 r_rigid_bond_restr 1.361 r_mcbond_it 1.089 r_angle_refined_deg 1.056 r_chiral_restr 0.076 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3013 Nucleic Acid Atoms Solvent Atoms 423 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling