2WHF

Interaction of Mycobacterium tuberculosis CYP130 with heterocyclic arylamines


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2UUQPDB ENTRY 2UUQ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.520% PEG 4000, 0.1M NA ACETATE, PH 5.5; 3% ISOPROPYL ALCOHOL
Crystal Properties
Matthews coefficientSolvent content
2.0439.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 160.897α = 90
b = 53.942β = 96.73
c = 44.047γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC CCDMIRRORS2008-10-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.58501000.0439.73.65124423.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.581.6199.60.453.13.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2UUQ1.5879.8145902513199.280.199990.195560.23963RANDOM25.131
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.09-0.91-0.490.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.533
r_dihedral_angle_4_deg18.257
r_dihedral_angle_3_deg14.329
r_sphericity_free8.393
r_sphericity_bonded5.932
r_dihedral_angle_1_deg5.184
r_scangle_it4.5
r_scbond_it3.128
r_mcangle_it2.082
r_rigid_bond_restr1.939
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.533
r_dihedral_angle_4_deg18.257
r_dihedral_angle_3_deg14.329
r_sphericity_free8.393
r_sphericity_bonded5.932
r_dihedral_angle_1_deg5.184
r_scangle_it4.5
r_scbond_it3.128
r_mcangle_it2.082
r_rigid_bond_restr1.939
r_angle_refined_deg1.656
r_mcbond_it1.376
r_chiral_restr0.105
r_bond_refined_d0.015
r_gen_planes_refined0.009
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3033
Nucleic Acid Atoms
Solvent Atoms164
Heterogen Atoms77

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing