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Structure of native Beta-Phosphoglucomutase in an open conformation without bound ligands.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZOL PDB ENTRY 1ZOL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 28-29 % PEG 4000 AND 200 MM NA ACETATE, pH 7.2
Crystal Properties Matthews coefficient Solvent content 2.02 38.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.239 α = 90 b = 56.9 β = 90 c = 75.441 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD GE211 2007-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 43.5 84.3 0.06 10.7 2.4 28532 3 19.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 43.1 0.34 2.1 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ZOL 1.55 20 27034 1454 84 0.177 0.176 0.1834 0.208 0.2136 RANDOM 14.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 -0.36 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.262 r_dihedral_angle_3_deg 14.295 r_dihedral_angle_4_deg 13.493 r_dihedral_angle_1_deg 5.56 r_scangle_it 5.458 r_scbond_it 3.203 r_mcangle_it 1.894 r_angle_refined_deg 1.686 r_mcbond_it 1.089 r_angle_other_deg 1.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.262 r_dihedral_angle_3_deg 14.295 r_dihedral_angle_4_deg 13.493 r_dihedral_angle_1_deg 5.56 r_scangle_it 5.458 r_scbond_it 3.203 r_mcangle_it 1.894 r_angle_refined_deg 1.686 r_mcbond_it 1.089 r_angle_other_deg 1.008 r_mcbond_other 0.343 r_chiral_restr 0.108 r_bond_refined_d 0.02 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1708 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing