☰ Navigation Tabs
Crystal structure of anti-apoptotic BHRF1 in complex with the Bim BH3 domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V6Q PDB ENTRY 2V6Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 0.1 M MALIC ACID PH 4 1.25 M NABR
Crystal Properties Matthews coefficient Solvent content 2.28 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.747 α = 90 b = 62.747 β = 90 c = 92.383 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 98.8 0.04 40 9.6 32170 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 93.1 0.57 2.4 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2V6Q 1.5 20 32170 1705 98.8 0.199 0.198 0.1971 0.205 0.2037 RANDOM 27.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.789 r_dihedral_angle_4_deg 22.297 r_dihedral_angle_3_deg 15.402 r_dihedral_angle_1_deg 11.678 r_scangle_it 4.668 r_scbond_it 3.404 r_mcangle_it 2.371 r_angle_refined_deg 1.685 r_mcbond_it 1.43 r_symmetry_hbond_refined 0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.789 r_dihedral_angle_4_deg 22.297 r_dihedral_angle_3_deg 15.402 r_dihedral_angle_1_deg 11.678 r_scangle_it 4.668 r_scbond_it 3.404 r_mcangle_it 2.371 r_angle_refined_deg 1.685 r_mcbond_it 1.43 r_symmetry_hbond_refined 0.324 r_nbtor_refined 0.313 r_xyhbond_nbd_refined 0.262 r_nbd_refined 0.253 r_symmetry_vdw_refined 0.201 r_chiral_restr 0.115 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1457 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing