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Proteasome-Activating Nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4, P61A Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WG5 PDB ENTRY 2WG5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 100 MM TRIS PH 8.6, 1 M NH4H2PO4, 25% PEG 200
Crystal Properties Matthews coefficient Solvent content 2.84 56.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.35 α = 90 b = 91.38 β = 119.97 c = 103.36 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 34.24 99.3 0.05 16.91 4.25 57981
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.65 98.4 0.76 2.03 4.21
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WG5 2.5 34.24 55082 2899 100 0.19754 0.19624 0.1979 0.22242 0.2198 RANDOM 47.431
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 -0.55 0.97 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.248 r_dihedral_angle_4_deg 20.771 r_dihedral_angle_3_deg 17.012 r_scangle_it 10.521 r_scbond_it 7.545 r_dihedral_angle_1_deg 6.539 r_mcangle_it 4.87 r_mcbond_it 3.606 r_angle_refined_deg 1.689 r_angle_other_deg 0.943
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.248 r_dihedral_angle_4_deg 20.771 r_dihedral_angle_3_deg 17.012 r_scangle_it 10.521 r_scbond_it 7.545 r_dihedral_angle_1_deg 6.539 r_mcangle_it 4.87 r_mcbond_it 3.606 r_angle_refined_deg 1.689 r_angle_other_deg 0.943 r_nbd_refined 0.228 r_nbd_other 0.197 r_nbtor_refined 0.185 r_symmetry_vdw_other 0.158 r_xyhbond_nbd_refined 0.157 r_mcbond_other 0.152 r_nbtor_other 0.09 r_chiral_restr 0.087 r_symmetry_hbond_refined 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7988 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing