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Proteasome-Activating Nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WFW PDB ENTRY 2WFW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 100 MM TRIS PH 9.0, 1 M NH4H2PO4, 25% ETHYLENE GLYCOL
Crystal Properties Matthews coefficient Solvent content 2.86 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.39 α = 90 b = 91.95 β = 119.93 c = 103.22 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 34.36 99.6 0.04 16.95 4.28 97626
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.22 99.7 0.69 2.26 4.23
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WFW 2.1 34.36 92772 4853 99.86 0.19901 0.19753 0.199 0.22742 0.2244 RANDOM 41.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.17 0.74 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.047 r_dihedral_angle_4_deg 22.065 r_dihedral_angle_3_deg 15.745 r_scangle_it 11.533 r_scbond_it 8.322 r_dihedral_angle_1_deg 6.563 r_mcangle_it 6.375 r_mcbond_it 4.308 r_angle_other_deg 4.229 r_angle_refined_deg 1.628
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.047 r_dihedral_angle_4_deg 22.065 r_dihedral_angle_3_deg 15.745 r_scangle_it 11.533 r_scbond_it 8.322 r_dihedral_angle_1_deg 6.563 r_mcangle_it 6.375 r_mcbond_it 4.308 r_angle_other_deg 4.229 r_angle_refined_deg 1.628 r_nbd_other 0.233 r_symmetry_vdw_other 0.21 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.177 r_nbtor_refined 0.173 r_symmetry_vdw_refined 0.141 r_symmetry_hbond_refined 0.132 r_nbtor_other 0.112 r_chiral_restr 0.1 r_xyhbond_nbd_other 0.028 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8029 Nucleic Acid Atoms Solvent Atoms 428 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing