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Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases - The Arc domain structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.05 MM CACL2, 0.1 M BIS-TRIS PH 6.5, 30% PEG550
Crystal Properties Matthews coefficient Solvent content 2.7 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.33 α = 90 b = 100.33 β = 90 c = 88 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 95.2 0.07 14.7 7 64443 3 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 78.6 0.53 3.2 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT NONE 1.6 20 61206 3222 100 0.21011 0.20825 0.2029 0.24641 0.24 RANDOM 26.377
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.09 0.18 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.267 r_dihedral_angle_4_deg 15.361 r_dihedral_angle_3_deg 13.26 r_dihedral_angle_1_deg 7.41 r_scangle_it 3.746 r_scbond_it 2.442 r_mcangle_it 1.715 r_angle_refined_deg 1.634 r_mcbond_it 1.073 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.267 r_dihedral_angle_4_deg 15.361 r_dihedral_angle_3_deg 13.26 r_dihedral_angle_1_deg 7.41 r_scangle_it 3.746 r_scbond_it 2.442 r_mcangle_it 1.715 r_angle_refined_deg 1.634 r_mcbond_it 1.073 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.254 r_nbd_refined 0.236 r_symmetry_hbond_refined 0.155 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.137 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2807 Nucleic Acid Atoms Solvent Atoms 461 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHARP phasing