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Crystal structure of DILP5 variant DB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% PEG4000
Crystal Properties Matthews coefficient Solvent content 1.66 26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.789 α = 90 b = 39.789 β = 90 c = 45.321 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH OSMIC MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 24.15 99.7 0.06 89 14.4 3070
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 100 0.17 25 14.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 24.15 3070 319 99.7 0.219 0.215 0.2206 0.256 0.2575 RANDOM 30.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.41 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.033 r_dihedral_angle_4_deg 20.5 r_dihedral_angle_3_deg 15.546 r_dihedral_angle_1_deg 5.397 r_scangle_it 4.289 r_scbond_it 2.864 r_mcangle_it 1.568 r_angle_refined_deg 1.465 r_mcbond_it 0.864 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.033 r_dihedral_angle_4_deg 20.5 r_dihedral_angle_3_deg 15.546 r_dihedral_angle_1_deg 5.397 r_scangle_it 4.289 r_scbond_it 2.864 r_mcangle_it 1.568 r_angle_refined_deg 1.465 r_mcbond_it 0.864 r_nbtor_refined 0.295 r_xyhbond_nbd_refined 0.259 r_symmetry_vdw_refined 0.209 r_nbd_refined 0.19 r_chiral_restr 0.1 r_symmetry_hbond_refined 0.095 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 334 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing