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Structure of the Candida albicans cytosolic leucyl-tRNA synthetase editing domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2 M AMMONIUM ACETATE, 0.01 M MAGNESIUM ACETATE TETRAHYDRATE, 0.05 M SODIUM CACODYLATE TRIHYDRATE PH 6.5, 30% W/V POLYETHYLENE GLYCOL 8000
Crystal Properties Matthews coefficient Solvent content 2.3 43.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.06 α = 90 b = 43.04 β = 107.57 c = 122.17 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 94.8 0.15 8.55 3 21666
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.02 71.5 0.4 2.92 1.77
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 28.83 20555 1112 95 0.24457 0.24148 0.234 0.30085 0.2884 RANDOM 28.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.24 -0.1 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.243 r_dihedral_angle_3_deg 17.43 r_dihedral_angle_4_deg 9.435 r_dihedral_angle_1_deg 5.153 r_scangle_it 1.452 r_angle_refined_deg 1.023 r_scbond_it 0.815 r_mcangle_it 0.631 r_mcbond_it 0.325 r_chiral_restr 0.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.243 r_dihedral_angle_3_deg 17.43 r_dihedral_angle_4_deg 9.435 r_dihedral_angle_1_deg 5.153 r_scangle_it 1.452 r_angle_refined_deg 1.023 r_scbond_it 0.815 r_mcangle_it 0.631 r_mcbond_it 0.325 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7760 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing