☰ Navigation Tabs
Structure of the human cytosolic leucyl-tRNA synthetase editing domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2 M SODIUM CITRATE TRIBASIC DIHYDRATE PH 8.3, 20% W/V POLYETHYLENE GLYCOL 3350
Crystal Properties Matthews coefficient Solvent content 3.45 63.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.54 α = 90 b = 94.54 β = 90 c = 148.82 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 99.8 0.15 7.46 3.12 15008
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.3 99.5 0.66 1.98 3.16
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 3.25 29.24 11198 612 100 0.204 0.202 0.2072 0.24 0.2462 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.273 r_dihedral_angle_3_deg 17.806 r_dihedral_angle_4_deg 17.321 r_dihedral_angle_1_deg 6.816 r_scangle_it 1.571 r_angle_refined_deg 1.318 r_scbond_it 0.943 r_angle_other_deg 0.852 r_mcangle_it 0.65 r_mcbond_it 0.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.273 r_dihedral_angle_3_deg 17.806 r_dihedral_angle_4_deg 17.321 r_dihedral_angle_1_deg 6.816 r_scangle_it 1.571 r_angle_refined_deg 1.318 r_scbond_it 0.943 r_angle_other_deg 0.852 r_mcangle_it 0.65 r_mcbond_it 0.336 r_chiral_restr 0.069 r_mcbond_other 0.043 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3922 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHELXD phasing