☰ Navigation Tabs
Structure of Beta-Phosphoglucomutase inhibited with Glucose-6- phosphate, and Beryllium trifluoride, crystal form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WF5 PDB ENTRY 2WF5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 28-29 % PEG 4000 AND 200 MM NA ACETATE, pH 7.2
Crystal Properties Matthews coefficient Solvent content 1.75 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.1 α = 90 b = 72.7 β = 90 c = 85.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD GE211 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 20 90.2 0.05 14.2 2.9 35943 3 11.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 58.5 0.29 2.4 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WF5 1.4 20 34083 1814 89.5 0.185 0.184 0.1911 0.2 0.2055 RANDOM 10.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.04 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.456 r_dihedral_angle_3_deg 12.535 r_dihedral_angle_4_deg 11.021 r_dihedral_angle_1_deg 6.722 r_scangle_it 2.449 r_scbond_it 2.422 r_rigid_bond_restr 1.998 r_angle_refined_deg 1.65 r_sphericity_free 1.631 r_sphericity_bonded 0.958
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.456 r_dihedral_angle_3_deg 12.535 r_dihedral_angle_4_deg 11.021 r_dihedral_angle_1_deg 6.722 r_scangle_it 2.449 r_scbond_it 2.422 r_rigid_bond_restr 1.998 r_angle_refined_deg 1.65 r_sphericity_free 1.631 r_sphericity_bonded 0.958 r_mcangle_it 0.909 r_angle_other_deg 0.901 r_mcbond_it 0.492 r_mcbond_other 0.112 r_chiral_restr 0.066 r_gen_planes_refined 0.016 r_bond_refined_d 0.014 r_bond_other_d 0.008 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1708 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing