2WF6

Structure of Beta-Phosphoglucomutase inhibited with Glucose-6-phosphate and Aluminium tetrafluoride


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WF5PDB ENTRY 2WF5

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.219-21 % PEG 3350 AND 50 MM MG ACETATE, pH 7.2
Crystal Properties
Matthews coefficientSolvent content
1.9335.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.8α = 90
b = 54.5β = 90
c = 105γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDGE211MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.42099.10.17.33.843021311.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4499.40.372.23.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WF51.42040773215598.50.1630.1610.191RANDOM11.19
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.610.21-0.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.1
r_dihedral_angle_4_deg16.241
r_dihedral_angle_3_deg11.55
r_sphericity_free6.551
r_dihedral_angle_1_deg5.185
r_sphericity_bonded4.943
r_scangle_it3.444
r_scbond_it2.271
r_mcangle_it1.533
r_angle_refined_deg1.395
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.1
r_dihedral_angle_4_deg16.241
r_dihedral_angle_3_deg11.55
r_sphericity_free6.551
r_dihedral_angle_1_deg5.185
r_sphericity_bonded4.943
r_scangle_it3.444
r_scbond_it2.271
r_mcangle_it1.533
r_angle_refined_deg1.395
r_angle_other_deg1.133
r_rigid_bond_restr1.125
r_mcbond_it1.013
r_mcbond_other0.669
r_chiral_restr0.155
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1680
Nucleic Acid Atoms
Solvent Atoms253
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing