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Crystal structure of Rv0371c from Mycobacterium tuberculosis H37Rv
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1 M MES PH 6.0 AND 18% PEG 4000 BY MICRO-SEEDING
Crystal Properties Matthews coefficient Solvent content 2.12 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.181 α = 90 b = 58.731 β = 90 c = 143.772 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 294 CCD ADSC CCD MIRRORS 2007-12-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 95.4 0.07 41.96 11.9 20560 2.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 73.6 0.25 5 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.1 31.67 18731 1025 100 0.221 0.217 0.2392 0.288 0.2993 RANDOM 19.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.23 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.372 r_dihedral_angle_4_deg 18.808 r_dihedral_angle_3_deg 15.272 r_scangle_it 5.486 r_dihedral_angle_1_deg 4.962 r_scbond_it 4.108 r_mcangle_it 2.327 r_mcbond_it 1.456 r_angle_refined_deg 1.101 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.372 r_dihedral_angle_4_deg 18.808 r_dihedral_angle_3_deg 15.272 r_scangle_it 5.486 r_dihedral_angle_1_deg 4.962 r_scbond_it 4.108 r_mcangle_it 2.327 r_mcbond_it 1.456 r_angle_refined_deg 1.101 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.232 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2903 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement DENZO data reduction HKL-2000 data scaling SOLVE phasing