☰ Navigation Tabs
Fasciola hepatica sigma class GST
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W9B PDB ENTRY 2W9B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.15M KBR, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.947 α = 90 b = 87.419 β = 90 c = 93.988 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH XENOCS FOX2D CU_25P M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS ROTATING ANODE COPPER K ALPHA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 20 95.5 0.07 16.1 4.6 56342
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.7 77.9 0.59 1.7 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2W9B 1.62 64.42 53036 2848 96.18 0.19262 0.19088 0.2041 0.22384 0.2286 RANDOM 22.157
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.91 -1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.765 r_dihedral_angle_4_deg 20.035 r_dihedral_angle_3_deg 14.612 r_scangle_it 6.41 r_dihedral_angle_1_deg 4.99 r_scbond_it 4.724 r_mcangle_it 3.461 r_mcbond_it 2.449 r_angle_refined_deg 1.428 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.765 r_dihedral_angle_4_deg 20.035 r_dihedral_angle_3_deg 14.612 r_scangle_it 6.41 r_dihedral_angle_1_deg 4.99 r_scbond_it 4.724 r_mcangle_it 3.461 r_mcbond_it 2.449 r_angle_refined_deg 1.428 r_nbtor_refined 0.309 r_nbd_refined 0.218 r_symmetry_hbond_refined 0.181 r_xyhbond_nbd_refined 0.163 r_symmetry_vdw_refined 0.16 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3442 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms 148
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing