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CRYSTAL STRUCTURE OF HUMAN ACYL-COA SYNTHETASE MEDIUM-CHAIN FAMILY MEMBER 2A (L64P MUTATION) IN COMPLEX WITH IBUPROFEN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3B7W PDB ENTRY 3B7W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2M AM ACETATE, 0.1M TRIS PH 8.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.43 49.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.32 α = 90 b = 98.32 β = 90 c = 381.44 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS OSMIC 2008-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 38.92 96.7 0.19 10.1 3.9 54507 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.67 90 0.47 2.3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3B7W 2.6 38.92 54057 2842 96.7 0.236 0.235 0.2333 0.255 0.2552 RANDOM 13.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 -0.62 1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.707 r_dihedral_angle_4_deg 16.083 r_dihedral_angle_3_deg 15.186 r_dihedral_angle_1_deg 5.772 r_scangle_it 3.515 r_scbond_it 2.395 r_angle_other_deg 2.199 r_mcangle_it 1.396 r_angle_refined_deg 1.232 r_mcbond_it 0.807
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.707 r_dihedral_angle_4_deg 16.083 r_dihedral_angle_3_deg 15.186 r_dihedral_angle_1_deg 5.772 r_scangle_it 3.515 r_scbond_it 2.395 r_angle_other_deg 2.199 r_mcangle_it 1.396 r_angle_refined_deg 1.232 r_mcbond_it 0.807 r_mcbond_other 0.108 r_chiral_restr 0.065 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12363 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing