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Crystal Structure of Tip-Alpha N34 (HP0596) from Helicobacter pylori at pH4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 100 MM CITRATE PH 4, 18% PEG 4000, 15 MM ATP
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.36 α = 90 b = 101.99 β = 94.38 c = 47.255 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50.96 98.4 0.06 7.62 4.08 22965 2 25.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 90.4 0.33 2.23 3.56
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.9 47.14 21752 1180 98.3 0.197 0.195 0.197 0.231 0.234 RANDOM 21.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.13 0.59 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.66 r_dihedral_angle_4_deg 17.683 r_dihedral_angle_3_deg 15.482 r_dihedral_angle_1_deg 6.511 r_scangle_it 4.907 r_scbond_it 2.902 r_mcangle_it 1.855 r_angle_refined_deg 1.482 r_mcbond_it 0.984 r_angle_other_deg 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.66 r_dihedral_angle_4_deg 17.683 r_dihedral_angle_3_deg 15.482 r_dihedral_angle_1_deg 6.511 r_scangle_it 4.907 r_scbond_it 2.902 r_mcangle_it 1.855 r_angle_refined_deg 1.482 r_mcbond_it 0.984 r_angle_other_deg 0.91 r_mcbond_other 0.233 r_chiral_restr 0.083 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2294 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing