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Structures of the Streptomyces coelicolor A3(2) Hyaluronan Lyase in Complex with Oligosaccharide Substrates and an Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4M NA-FORMATE
Crystal Properties Matthews coefficient Solvent content 2.69 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.11 α = 90 b = 140.11 β = 90 c = 100.652 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 100 89.4 0.08 2.8 63596
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.94 100 63596 3382 89.42 0.17104 0.16984 0.1777 0.19284 0.1993 RANDOM 24.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.32 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.736 r_dihedral_angle_4_deg 16.08 r_dihedral_angle_3_deg 13.361 r_dihedral_angle_1_deg 8.41 r_scangle_it 4.603 r_scbond_it 3.111 r_angle_refined_deg 1.896 r_mcangle_it 1.754 r_mcbond_it 1.167 r_angle_other_deg 1.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.736 r_dihedral_angle_4_deg 16.08 r_dihedral_angle_3_deg 13.361 r_dihedral_angle_1_deg 8.41 r_scangle_it 4.603 r_scbond_it 3.111 r_angle_refined_deg 1.896 r_mcangle_it 1.754 r_mcbond_it 1.167 r_angle_other_deg 1.056 r_mcbond_other 0.45 r_chiral_restr 0.128 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5679 Nucleic Acid Atoms Solvent Atoms 768 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing