☰ Navigation Tabs
calcium-free (apo) S100A12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K9P PDB ENTRY 1K9P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.4M NA-CITRATE, PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.7 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.516 α = 90 b = 77.516 β = 90 c = 99.076 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 55.6 99 0.07 22.7 5.6 21533 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 99.1 0.64 2.07 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1K9P 1.77 55.56 20449 1102 99.7 0.165 0.163 0.205 0.2826 RANDOM 13.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 0.35 0.69 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.183 r_dihedral_angle_3_deg 13.623 r_dihedral_angle_4_deg 8.18 r_dihedral_angle_1_deg 5.142 r_scangle_it 4.535 r_scbond_it 3.2 r_mcangle_it 1.658 r_angle_refined_deg 1.368 r_angle_other_deg 0.956 r_mcbond_it 0.919
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.183 r_dihedral_angle_3_deg 13.623 r_dihedral_angle_4_deg 8.18 r_dihedral_angle_1_deg 5.142 r_scangle_it 4.535 r_scbond_it 3.2 r_mcangle_it 1.658 r_angle_refined_deg 1.368 r_angle_other_deg 0.956 r_mcbond_it 0.919 r_chiral_restr 0.093 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1422 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing