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Crystal structure of the assembled cytolysin A pore
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 100 MM TRIS-HCL (PH 8.4), 100-160 MM MGCL2, 12-17% PEG400
Crystal Properties Matthews coefficient Solvent content 4.05 69.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.43 α = 94.44 b = 114.41 β = 85.92 c = 270.55 γ = 102.55
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.29 49.36 94.6 0.07 9.9 3.4 186840 -3 98.09
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.29 3.47 91.2 0.45 2.2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD NONE 3.29 49.37 0.98 347936 7005 88.1 0.228 0.228 0.224 0.244 0.2372
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.7282 8.8864 16.7039 16.5753 -12.4453 -46.6251
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.868 f_angle_d 0.879 f_chiral_restr 0.052 f_bond_d 0.006 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 53688 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 144
Software Software Software Name Purpose XDS data reduction SCALA data scaling SHELXD phasing SHARP phasing PHENIX refinement