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Crystal structure of human acyl-CoA dehydrogenase 11
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 50% PEG 300, 0.20 M NACL, 0.1 M NA/K-PO4, PH 6.2
Crystal Properties Matthews coefficient Solvent content 3.53 64.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.089 α = 90 b = 128.089 β = 90 c = 129.91 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2009-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 45.6 100 0.09 7.8 3.7 30800 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 100 0.53 1.9 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 45.6 29219 1550 99.9 0.225 0.224 0.2387 0.248 0.2583 RANDOM 43.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.59 0.79 1.59 -2.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.814 r_dihedral_angle_4_deg 21.272 r_dihedral_angle_3_deg 16.664 r_dihedral_angle_1_deg 5.857 r_scangle_it 1.762 r_angle_refined_deg 1.355 r_scbond_it 1.073 r_mcangle_it 0.551 r_mcbond_it 0.276 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.814 r_dihedral_angle_4_deg 21.272 r_dihedral_angle_3_deg 16.664 r_dihedral_angle_1_deg 5.857 r_scangle_it 1.762 r_angle_refined_deg 1.355 r_scbond_it 1.073 r_mcangle_it 0.551 r_mcbond_it 0.276 r_chiral_restr 0.093 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6042 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 130
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing