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Properties of Trypanothione Reductase From T. brucei
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BZL PDB ENTRY 1BZL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.1 M BIS-TRIS PH 8.0, 2.0 AMMONIUM SULFATE, 5 % PEG 400
Crystal Properties Matthews coefficient Solvent content 3.2 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.63 α = 90 b = 132.713 β = 90 c = 161.287 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS (OSMIC BLUE) 2006-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 41.07 94.9 0.05 22.9 5 55415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 85.7 0.1 9.2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BZL 2.3 102.6 55398 2952 94.81 0.18315 0.1808 0.1768 0.22715 0.2241 RANDOM 19.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.11 -1.04 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.01 r_dihedral_angle_3_deg 13.678 r_dihedral_angle_4_deg 13.089 r_dihedral_angle_1_deg 5.673 r_scangle_it 2.217 r_scbond_it 1.321 r_angle_refined_deg 0.956 r_mcangle_it 0.864 r_mcbond_it 0.445 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.01 r_dihedral_angle_3_deg 13.678 r_dihedral_angle_4_deg 13.089 r_dihedral_angle_1_deg 5.673 r_scangle_it 2.217 r_scbond_it 1.321 r_angle_refined_deg 0.956 r_mcangle_it 0.864 r_mcbond_it 0.445 r_nbtor_refined 0.305 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.158 r_symmetry_hbond_refined 0.122 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.074 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7424 Nucleic Acid Atoms Solvent Atoms 786 Heterogen Atoms 235
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing