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Pullulanase from Bacillus acidopullulyticus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25-35% AS (V/V OF SATURATED SOLUTION), 0.1 M ACETATE BUFFER PH 4.5, 5-10 MM NDSB 195, OR 256, OR DETERGENT SB12
Crystal Properties Matthews coefficient Solvent content 2.95 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.431 α = 90 b = 61.983 β = 109.1 c = 109.668 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD 1998-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 104 95.8 0.07 14.5 3.1 124792
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 89.1 0.7 1.5 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 1.65 105.41 112593 6035 95.06 0.17681 0.17504 0.1745 0.21035 0.2101 RANDOM 21.218
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.01 -0.16 0.48 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.217 r_dihedral_angle_4_deg 19.149 r_dihedral_angle_3_deg 11.961 r_dihedral_angle_1_deg 5.813 r_scangle_it 4.987 r_scbond_it 3.433 r_mcangle_it 2.117 r_mcbond_it 1.368 r_angle_refined_deg 1.193 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.217 r_dihedral_angle_4_deg 19.149 r_dihedral_angle_3_deg 11.961 r_dihedral_angle_1_deg 5.813 r_scangle_it 4.987 r_scbond_it 3.433 r_mcangle_it 2.117 r_mcbond_it 1.368 r_angle_refined_deg 1.193 r_nbtor_refined 0.303 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.178 r_symmetry_hbond_refined 0.17 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6283 Nucleic Acid Atoms Solvent Atoms 977 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing