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Aplysia californica AChBP bound to in silico compound 35
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C9T PDB ENTRY 2C9T
Crystallization Crystal Properties Matthews coefficient Solvent content 3.12 60.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.51 α = 90 b = 173.628 β = 90 c = 129.119 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 106 87.5 0.117 5.6 2.5 40542 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 87.5 0.547 1.1 1.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2C9T 2.6 106.6 38507 2032 87 0.203 0.2 0.1992 0.25 0.2495 RANDOM 22.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.64 1.92 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.041 r_dihedral_angle_4_deg 16.75 r_dihedral_angle_3_deg 14.508 r_dihedral_angle_1_deg 7.224 r_scangle_it 2.251 r_angle_refined_deg 1.65 r_scbond_it 1.531 r_angle_other_deg 0.909 r_mcangle_it 0.882 r_mcbond_it 0.723
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.041 r_dihedral_angle_4_deg 16.75 r_dihedral_angle_3_deg 14.508 r_dihedral_angle_1_deg 7.224 r_scangle_it 2.251 r_angle_refined_deg 1.65 r_scbond_it 1.531 r_angle_other_deg 0.909 r_mcangle_it 0.882 r_mcbond_it 0.723 r_symmetry_vdw_refined 0.383 r_symmetry_hbond_refined 0.378 r_symmetry_vdw_other 0.286 r_xyhbond_nbd_refined 0.234 r_nbd_refined 0.222 r_nbd_other 0.213 r_nbtor_refined 0.195 r_nbtor_other 0.094 r_chiral_restr 0.086 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8281 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing