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Xyl-CBM35 in complex with glucuronic acid containing disaccharide.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W46 PDB ENTRY 2W46
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.9 20% PEG 3350, 0.4M THIOCYANATE PH 6.9
Crystal Properties Matthews coefficient Solvent content 2 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.85 α = 71.79 b = 45.45 β = 89.74 c = 48.91 γ = 81.28
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 24 91.9 0.11 11.7 3.1 30820
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.67 80.8 0.22 3.4 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2W46 1.6 24.15 26229 1372 92.9 0.145 0.143 0.1562 0.193 0.2084 RANDOM 11.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -1.26 0.3 1.25 -0.44 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.221 r_dihedral_angle_4_deg 21.806 r_dihedral_angle_3_deg 10.538 r_dihedral_angle_1_deg 6.522 r_scangle_it 3.344 r_scbond_it 2.336 r_mcangle_it 1.664 r_angle_refined_deg 1.371 r_mcbond_it 1.087 r_angle_other_deg 0.811
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.221 r_dihedral_angle_4_deg 21.806 r_dihedral_angle_3_deg 10.538 r_dihedral_angle_1_deg 6.522 r_scangle_it 3.344 r_scbond_it 2.336 r_mcangle_it 1.664 r_angle_refined_deg 1.371 r_mcbond_it 1.087 r_angle_other_deg 0.811 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.219 r_nbd_other 0.213 r_symmetry_vdw_other 0.176 r_nbtor_refined 0.172 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.14 r_nbtor_other 0.084 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1968 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing