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Structure of the human LINE-1 ORF1p central domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 2.2 M NA-MALONATE, PH7.0
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.36 α = 90 b = 54.71 β = 102.95 c = 57.81 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH MIRRORS 2008-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 56 99.4 0.05 13.9 3.7 38608 13.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 96.6 0.53 2.8 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.4 56.34 36445 1916 99.3 0.138 0.135 0.185 0.2024 RANDOM 14.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 0.1 -0.36 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.586 r_dihedral_angle_4_deg 14.624 r_dihedral_angle_3_deg 14.321 r_scangle_it 10.506 r_scbond_it 7.153 r_mcangle_it 5.746 r_dihedral_angle_1_deg 5.503 r_mcbond_it 4.344 r_angle_refined_deg 1.686 r_angle_other_deg 0.976
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.586 r_dihedral_angle_4_deg 14.624 r_dihedral_angle_3_deg 14.321 r_scangle_it 10.506 r_scbond_it 7.153 r_mcangle_it 5.746 r_dihedral_angle_1_deg 5.503 r_mcbond_it 4.344 r_angle_refined_deg 1.686 r_angle_other_deg 0.976 r_chiral_restr 0.103 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1604 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHELX phasing SHARP phasing autoSHARP phasing