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Structures of P. aeruginosa FpvA bound to heterologous pyoverdines: FpvA-Pvd(Pa6)-Fe complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O5P PDB ENTRY 2O5P
Crystallization Crystal Properties Matthews coefficient Solvent content 3.89 68.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 193.422 α = 90 b = 129.932 β = 130.77 c = 140.877 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 107 92.5 0.09 7.9 2 59938
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 83.5 0.37 2.7 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2O5P 2.8 97.13 54992 2923 89.1 0.217 0.215 0.2132 0.265 0.2613 RANDOM 31.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 1.72 0.83 1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.328 r_dihedral_angle_4_deg 22.95 r_dihedral_angle_3_deg 20.948 r_dihedral_angle_1_deg 7.979 r_scangle_it 3.279 r_scbond_it 2.099 r_angle_refined_deg 1.985 r_mcangle_it 1.404 r_mcbond_it 0.813 r_nbtor_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.328 r_dihedral_angle_4_deg 22.95 r_dihedral_angle_3_deg 20.948 r_dihedral_angle_1_deg 7.979 r_scangle_it 3.279 r_scbond_it 2.099 r_angle_refined_deg 1.985 r_mcangle_it 1.404 r_mcbond_it 0.813 r_nbtor_refined 0.323 r_symmetry_hbond_refined 0.289 r_symmetry_vdw_refined 0.266 r_nbd_refined 0.247 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.128 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12165 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 125
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling