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Structures of P. aeruginosa FpvA bound to heterologous pyoverdines: FpvA-Pvd(DSM50106)-Fe complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O5P PDB ENTRY 2O5P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 1.3M NAH2PO4, 0.1M MES, PH 6.5
Crystal Properties Matthews coefficient Solvent content 3.85 67.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 194.557 α = 90 b = 129.126 β = 131.65 c = 141.817 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 107 93.7 0.11 7.6 2.4 54303
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.06 94.2 0.38 2.3 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2O5P 2.9 106 51513 2785 93.4 0.208 0.205 0.2044 0.263 0.2606 RANDOM 16.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.24 2.85 -0.12 1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.077 r_dihedral_angle_4_deg 21.829 r_dihedral_angle_3_deg 20.765 r_dihedral_angle_1_deg 8.21 r_scangle_it 3.421 r_scbond_it 2.194 r_angle_refined_deg 1.981 r_mcangle_it 1.318 r_mcbond_it 0.8 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.077 r_dihedral_angle_4_deg 21.829 r_dihedral_angle_3_deg 20.765 r_dihedral_angle_1_deg 8.21 r_scangle_it 3.421 r_scbond_it 2.194 r_angle_refined_deg 1.981 r_mcangle_it 1.318 r_mcbond_it 0.8 r_nbtor_refined 0.319 r_symmetry_vdw_refined 0.243 r_nbd_refined 0.241 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.164 r_chiral_restr 0.133 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12179 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 125
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling