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Saccharomyces cerevisiae Gas2p in complex with laminaripentaose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other DERIVATIVE MODEL, NOT DEPOSITED
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 100 MM SODIUM ACETATE PH 4.5; 5% ACETONE; 20% 1,4-BUTANEDIOL
Crystal Properties Matthews coefficient Solvent content 2 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.039 α = 90 b = 70.841 β = 90 c = 149.149 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 RIGAKU M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 20 99.7 0.04 23.3 5.3 45921
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 100 0.29 5.5 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT DERIVATIVE MODEL, NOT DEPOSITED 1.85 23 45304 555 99.5 0.184 0.183 0.1878 0.21 0.2131 RANDOM 42.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.26 0.21 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.927 r_dihedral_angle_4_deg 15.242 r_dihedral_angle_3_deg 13.925 r_dihedral_angle_1_deg 9.878 r_scangle_it 3.441 r_scbond_it 2.269 r_mcangle_it 1.468 r_angle_refined_deg 1.309 r_mcbond_it 0.839 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.927 r_dihedral_angle_4_deg 15.242 r_dihedral_angle_3_deg 13.925 r_dihedral_angle_1_deg 9.878 r_scangle_it 3.441 r_scbond_it 2.269 r_mcangle_it 1.468 r_angle_refined_deg 1.309 r_mcbond_it 0.839 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3474 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 118
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling