☰ Navigation Tabs
Anti citrullinated Collagen type 2 antibody acc4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VL5 PDB ENTRY 2VL5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.15 M AMMONIUM NITRATE, 25% PEG 3350, pH 8
Crystal Properties Matthews coefficient Solvent content 2.38 48.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.8 α = 90 b = 70 β = 90 c = 136.6 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 68.2 97.4 0.07 20.5 3.6 64156 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.55 97.7 0.28 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2VL5 1.5 68.3 64528 3399 97.4 0.171 0.169 0.22 0.2292 RANDOM 17.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.92 1.75 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.538 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_3_deg 12.265 r_dihedral_angle_1_deg 6.594 r_scangle_it 6.461 r_mcangle_it 4.748 r_scbond_it 4.614 r_mcbond_it 3.245 r_angle_other_deg 1.497 r_angle_refined_deg 1.462
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.538 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_3_deg 12.265 r_dihedral_angle_1_deg 6.594 r_scangle_it 6.461 r_mcangle_it 4.748 r_scbond_it 4.614 r_mcbond_it 3.245 r_angle_other_deg 1.497 r_angle_refined_deg 1.462 r_chiral_restr 0.118 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3321 Nucleic Acid Atoms Solvent Atoms 522 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing