☰ Navigation Tabs
High resolution crystallographic structure of the Clostridium thermocellum N-terminal endo-1,4-beta-D-xylanase 10B (Xyn10B) CBM22-1- GH10 modules complexed with xylohexaose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 292 1 M NA ACETATE, 0.1 M HEPES PH 7.5, 0.05 M CDSO4, 10 MM XYLOHEXAOSE AT 292K
Crystal Properties Matthews coefficient Solvent content 4.74 74.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.178 α = 90 b = 173.178 β = 90 c = 131.71 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 65.8 99.9 0.12 17.3 19.2 176859 1.7 30.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.11 99.7 1 1.7 10.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.9 150.76 167526 8837 98.9 0.166 0.164 0.194 0.2019 RANDOM 30.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.16 -0.32 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.79 r_dihedral_angle_4_deg 17.215 r_dihedral_angle_3_deg 14.364 r_dihedral_angle_1_deg 6.658 r_scangle_it 2.797 r_scbond_it 1.785 r_angle_refined_deg 1.318 r_mcangle_it 1.035 r_mcbond_it 0.616 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.79 r_dihedral_angle_4_deg 17.215 r_dihedral_angle_3_deg 14.364 r_dihedral_angle_1_deg 6.658 r_scangle_it 2.797 r_scbond_it 1.785 r_angle_refined_deg 1.318 r_mcangle_it 1.035 r_mcbond_it 0.616 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.2 r_xyhbond_nbd_refined 0.184 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8040 Nucleic Acid Atoms Solvent Atoms 1598 Heterogen Atoms 105
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing SOLVE phasing RESOLVE phasing