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Structural and biochemical analysis of human pathogenic astrovirus serine protease at 2.0 Angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 100 MM MES PH 6.5, 1 M SODIUM SUCCINATE, 10 MM CDCL2
Crystal Properties Matthews coefficient Solvent content 4.71 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.047 α = 90 b = 135.047 β = 90 c = 189.955 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 98.1 0.1 9.2 3.7 132495
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.9 0.38 2.6 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2 30 131058 1335 97.9 0.234 0.234 0.2324 0.258 0.2545 RANDOM 33.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.29 0.57 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.734 r_dihedral_angle_4_deg 15.081 r_dihedral_angle_3_deg 12.936 r_dihedral_angle_1_deg 6.22 r_scangle_it 1.755 r_scbond_it 1.117 r_angle_refined_deg 1.058 r_mcangle_it 1.025 r_mcbond_it 0.595 r_xyhbond_nbd_refined 0.405
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.734 r_dihedral_angle_4_deg 15.081 r_dihedral_angle_3_deg 12.936 r_dihedral_angle_1_deg 6.22 r_scangle_it 1.755 r_scbond_it 1.117 r_angle_refined_deg 1.058 r_mcangle_it 1.025 r_mcbond_it 0.595 r_xyhbond_nbd_refined 0.405 r_nbtor_refined 0.296 r_symmetry_hbond_refined 0.293 r_symmetry_vdw_refined 0.202 r_nbd_refined 0.2 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7374 Nucleic Acid Atoms Solvent Atoms 336 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing