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Structure of SmeT, the repressor of the Stenotrophomonas maltophilia multidrug efflux pump SmeDEF.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 30% MME2000, 0.2M LI2SO4, 0.1M TRIS PH8.5
Crystal Properties Matthews coefficient Solvent content 2.8 55.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.703 α = 90 b = 58.582 β = 103.14 c = 83.26 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 55.22 97.2 0.05 9.13 7.31 35083 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 96.3 0.19 3.86 7.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 2 19.86 33278 1760 97 0.196 0.194 0.1937 0.236 0.2353 RANDOM 41.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.04 0.23 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.388 r_dihedral_angle_3_deg 15.114 r_dihedral_angle_4_deg 14.415 r_scangle_it 4.167 r_dihedral_angle_1_deg 3.73 r_scbond_it 2.895 r_mcangle_it 2.525 r_mcbond_it 1.549 r_angle_refined_deg 1.453 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.388 r_dihedral_angle_3_deg 15.114 r_dihedral_angle_4_deg 14.415 r_scangle_it 4.167 r_dihedral_angle_1_deg 3.73 r_scbond_it 2.895 r_mcangle_it 2.525 r_mcbond_it 1.549 r_angle_refined_deg 1.453 r_chiral_restr 0.103 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2900 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling HKL2Map phasing