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Clostridium thermocellum CBM35 in complex with delta-4,5- anhydrogalacturonic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 1.6M SODIUM CITRATE
Crystal Properties Matthews coefficient Solvent content 2.06 54.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.033 α = 90 b = 86.033 β = 90 c = 75.905 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 74.54 99.7 0.08 24.1 13 31544 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.43 98.3 0.64 3.7 12.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 74.54 31544 1680 99.7 0.188 0.188 0.201 0.205 RANDOM 14.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.16 0.32 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.221 r_dihedral_angle_3_deg 9.61 r_dihedral_angle_4_deg 9.598 r_dihedral_angle_1_deg 6.311 r_scangle_it 2.395 r_scbond_it 1.68 r_angle_refined_deg 1.19 r_mcangle_it 1.002 r_mcbond_it 0.632 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.221 r_dihedral_angle_3_deg 9.61 r_dihedral_angle_4_deg 9.598 r_dihedral_angle_1_deg 6.311 r_scangle_it 2.395 r_scbond_it 1.68 r_angle_refined_deg 1.19 r_mcangle_it 1.002 r_mcbond_it 0.632 r_nbtor_refined 0.312 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.178 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.076 r_symmetry_hbond_refined 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1020 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing