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Structure of the Evf virulence factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25% PEG4000, 50MM BICINE PH 8
Crystal Properties Matthews coefficient Solvent content 2.12 41.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.56 α = 90 b = 86.715 β = 90 c = 91.457 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 80 100 0.1 25.6 27.7 38113 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2 62.87 36142 1900 100 0.203 0.2 0.1992 0.25 0.251 RANDOM 33.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 -0.11 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.498 r_dihedral_angle_4_deg 23.578 r_dihedral_angle_3_deg 14.861 r_dihedral_angle_1_deg 5.845 r_scangle_it 2.713 r_scbond_it 1.754 r_mcangle_it 1.197 r_angle_refined_deg 1.179 r_mcbond_it 0.706 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.498 r_dihedral_angle_4_deg 23.578 r_dihedral_angle_3_deg 14.861 r_dihedral_angle_1_deg 5.845 r_scangle_it 2.713 r_scbond_it 1.754 r_mcangle_it 1.197 r_angle_refined_deg 1.179 r_mcbond_it 0.706 r_nbtor_refined 0.298 r_nbd_refined 0.188 r_symmetry_vdw_refined 0.151 r_xyhbond_nbd_refined 0.131 r_symmetry_hbond_refined 0.113 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4247 Nucleic Acid Atoms Solvent Atoms 362 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement